1. Hanqing Xiong, Zhenqiao Zhou, Mingqiang Zhu, Xiaohua Lv, Anan Li, Shiwei Li, Longhui Li, Tao Yang, Siming Wang, Zhongqin Yang, Tonghui Xu, Qingming Luo, Hui Gong*, Shaoqun Zeng*. Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging. Nature Communications, 2014, 5:3992.
2. Wanneng Yang1, Zilong Guo1, Chenglong Huang1, Lingfeng Duan1, Guoxing Chen1, Ni Jiang, Wei Fang, Hui Feng, Weibo Xie, Xingming Lian, Gongwei Wang, Qingming Luo, Qifa Zhang, Qian Liu*, Lizhong Xiong*. Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice. Nature Communications, 2014, 5:5087.
3. Deng Pan1, Zhe Hu1, Fengwu Qiu1, Zhen-Li Huang, Yilong Ma, Yina Wang, Lingsong Qin, Zhihong Zhang, Shaoqun Zeng, Yu-Hui Zhang*. A general strategy for developing cell-permeable photo-modulatable organic fluorescent probes for live-cell super-resolution imaging. Nature Communications, 2014, 5:5573.
4. Haiming Luo, Lisen Lu, Fei Yang, Liang Wang, Xiaoquan Yang, Qingming Luo, Zhihong Zhang*. Nasopharyngeal Cancer-Specific Therapy Based on Fusion Peptide-Functionalized Lipid Nanoparticles. ACS Nano, 2014, 8(5):4334-4347.
5. Hang-jun Wu, Yi-jun Liu, Hui-quan Li, Cong Chen, Ying Dou, Hui-fang Lou, Margaret S Ho, Xiao-ming Li, Zhihua Gao*, Shumin Duan. Analysis of microglial migration by a micropipette assay. Nature Protocols, 2014, 9(2): 491-500.
6. Bailei Sun, Lei Zhang, Hui Gong, Jinyan Sun, Qingming Luo*. Detection of optical neuronal signals in the visual cortex using continuous wave near-infrared spectroscopy. Neuroimage, 2014, 87:190-198.
7. Jingpeng Wu1, Yong He1, Zhongqin Yang1, Congdi Guo, Qingming Luo, Wei Zhou, Shangbin Chen, Anan Li, Benyi Xiong, Tao Jiang, Hui Gong*. 3D BrainCV: simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution. Neuroimage, 2014, 87:199-208.
8. Bing Li1, Rui Liu1, Qin Huang, Jinling Lu, Qingming Luo, Pengcheng Li*. Coherent slow cortical potentials reveal a superior localization of resting-state functional connectivity using voltage-sensitive dye imaging. Neuroimage, 2014, 91: 162-168.
9. Ming-Qiang Zhu*, Guo-Feng Zhang, Zhe Hu, Matthew P. Aldred, Chong Li, Wen-Liang Gong, Tao Chen, Zhen-Li Huang*, Shiyong Liu*. Reversible Fluorescence Switching of Spiropyran-Conjugated Biodegradable Nanoparticles for Super-Resolution Fluorescence Imaging. Macromolecules, 2014, 47:1543-1552.
10. Xiaobao Liang, Ling Fu*. Enhanced self-phase modulation enables a 700–900 nm linear compressible continuum for multicolor two-photon microscopy. IEEE Journal of Selected Topics in Quantum Electronics, 2014, 20(2):6800108.
11. Jing Wang, Yang Zhang, Pengcheng Li, Qingming Luo, Dan Zhu*. Review: Tissue optical clearing window for blood flow monitoring using laser speckle contrast imaging. IEEE Journal of Selected Topics in Quantum Electronics, 2014, 20(2):6801112.
12. Jing Wang, Ning Ma, Rui Shi, Yang Zhang, Tingting Yu, Dan Zhu*. Sugar-induced skin optical clearing: from molecular dynamics simulation to experimental demonstration. IEEE Journal of Selected Topics in Quantum Electronics, 2014, 20(2):7101007.
13. Xiaoquan Yang, Yanyan Liu, Dan Zhu, Rui Shi, Qingming Luo*. Dynamic monitoring of optical clearing of skin using photoacoustic microscopy and ultrasonography. Optics Express, 2014, 22(1): 1094-1104.
14. Xiewei Zhong, Xiang Wen, Dan Zhu*. Lookup-table-based inverse model for human skin reflectance spectroscopy: two-layered Monte Carlo simulations and experiments. Optics Express, 2014, 22(1), 1852-1864.
15. Yina Wang1, Joerg Schnitzbauer1, Zhe Hu1, Xueming Li, Yifan Cheng, Zhen-Li Huang*, Bo Huang*. Localization events-based sample drift correction for localization microscopy with redundant cross-correlation algorithm. Optics Express, 2014, 22(13): 15982-15991.
16. Xu Jiang, Yong Deng*, Zhaoyang Luo, Kan Wang, Lichao Lian, Xiaoquan Yang, Igor Meglinski, Qingming Luo. Evaluation of path-history-based fluorescence Monte Carlo method for photon migration in heterogeneous media. Optics Express, 2014, 22(26), 31948-31965.
17. Bowen Jiang, Xiaoquan Yang, Yanyan Liu, Yong Deng, Qingming Luo*. Multiscale photoacoustic microscopy with continuously tunable resolution. Optics Letters. 2014, 39(13):3939-3941.
18. Wenhao Xie, Yong Deng*, Kan Wang, Xiaoquan Yang, Qingming Luo. Reweighted L1 regularization for restraining artifacts in FMT reconstruction images with limited measurements. Optics Letters. 2014, 39(14):4148-4153.
19. Meijie Luo, Zhihong Zhang*, Hui Li, Sha Qiao, Zheng Liu, Ling Fu, Guanxin Shen, Qingming Luo*. Multi-scale optical imaging of the delayed type hypersensitivity reaction attenuated by rapamycin. Theranostics, 2014, 4(2): 201-214.
20. Hong-Xing Xia1, Xiao-Quan Yang1, Ji-Tao Song, Jun Chen, Ming-Zhen Zhang, Dong-Mei Yan, Lin Zhang, Meng-Yao Qin, Ling-Yu Bai, Yuan-Di Zhao*, Zhi-Ya Ma*. Folic acid-conjugated silica-coated gold nanorods and quantum dots for dual-modality CT and fluorescence imaging and photothermal therapy. Journal of Materials Chemistry B, 2014, 2: 1945–1953.
21. Tingwei Quan1, Jing Li1, Hang Zhou, Shiwei Li, Ting Zheng, Zhongqing Yang, Qingming Luo, Hui Gong*, Shaoqun Zeng*. Digital reconstruction of the cell body in dense neural circuits using a spherical-coordinated variational model. Scientific Reports, 2014, 4:4970.
22. Jing Li1, Jia Jia1, Hong Li, Jian Yu, Han Sun, Ying He, Daqing Lv, Xiaojuan Yang, Michael O. Glocker, Liangxiao Ma, Jiabei Yang, Ling Li, Wei Li, Guoqing Zhang, Qian Liu*, Yixue Li*, Lu Xie*. SysPTM 2.0: an updated systematic resource for post-translational modification. Database, 2014, 2014:bau025.
23. Fan Long, Shaoqun Zeng, Zhenli Huang*. Effects of fixed pattern noise on single molecule localization microscopy. Physical Chemistry Chemical Physics, 2014, 16: 21586-21594.
24. Qiaoya Lin, Juan Chen, Kenneth K. Ng, Weiguo Cao, Zhihong Zhang*, Gang Zheng*. Imaging the cytosolic drug delivery mechanism of HDL-like nanoparticles. Pharmaceutical Research, 2014, 31:1438-1449.
25. Jun Chen1, Xiaoquan Yang1, Yuanzheng Meng, Huanhuan Huang, Mengyao Qin, Dongmei Yan, Yuan-Di Zhao*, Zhi-Ya Ma*. In vitro and in vivo CT imaging using bismuth sulfide modified with a highly biocompatible Pluronic F127. Nanotechnology, 2014, 25(29):295103.
26. Bing Li, Shangbin Chen*, Pengcheng Li, Qingming Luo, Hui Gong. Refractory period modulates the spatiotemporal evolution of cortical spreading depression: a computational study. PLoS One, 2014, 9(1): e84609.
27. Songchao Xue, Hui Gong, Tao Jiang, Weihua Luo, Yuanzheng Meng, Qian Liu,Shangbin Chen, Anan Li*. Indian-ink perfusion based method for reconstructing continuous vascular networks in whole mouse brain. PLoS One, 2014, 9(1):e88067.
28. Yong He1, Yunlong Meng1, Hui Gong, Shangbin Chen, Bin Zhang, Wenxiang Ding, Qingming Luo, Anan Li*.  An automated three-dimensional detection and segmentation method for touching cells by integrating concave points clustering and random walker algorithm. PLoS One, 2014, 9(8): e104437.
29. Cheng Gong, Deng Pan, Fengwu Qiu, Pei Sun, Yu-Hui Zhang*. Selective DNA delivery to tumor cells using an Oligoarginine-LTVSPWY peptide. PLoS One, 2014, 9(10): e110632.
30. Hua Shi1, Nannan Sun1, Avraham Mayevsky, Zhihong Zhang, Qingming Luo*. Preclinical evidence of mitochondrial nicotinamide adenine dinucleotide as an effective alarm parameter under hypoxia. Journal of Biomedical Optics, 2014, 19(1): 17005-1-6.
31. Lei Zhang, Jinyan Sun, Bailei Sun, Qingming Luo, Hui Gong*. Studying hemispheric lateralization during a Stroop task through near-infrared spectroscopy-based connectivity. Journal of Biomedical Optics, 2014, 19(5):057012.
32. Anle Wang, Jing Yuan, Weihua Luo, Mengmeng Liu, Qingming Luo*. Optimization of sample cooling temperature for redox cryo-imaging. Journal of Biomedical Optics, 2014, 19(8):080502.
33. Qingping Tian, Jing Yuan, Yuxin Li, Tao Jiang, Hui Gong, Wei Zhou*. Fast and automatic imaging of immunoenzyme-stained neuronal circuits in the whole brain of Drosophila. Journal of Biomedical Optics, 2014, 19(9): 090506.
34. Shun Liu1, Xiangyong Li1, Jie Yang, Zhihong Zhang*. Low false-positives in an mLumin-based bimolecular fluorescence complementation system with a bicistronic expression vector. Sensors, 2014, 14:3284-3292.
35. Jinqin Ai, Tianwu Xie, Wenjuan Sun, Qian Liu*. Red bone marrow dose calculations in radiotherapy of prostate cancer based on the updated VCH adult male phantom. Physics in Medicine and Biology, 2014, 59: 1815–1830.
36. Nannan Sun, Weihua Luo, Lin Z. Li, Qingming Luo*. Monitoring hemodynamic and metabolic alterations during severe hemorrhagic shock in rat brains. Academic Radiology, 2014, 21(2): 175-184.
37. Yuanzheng Meng, Xiaoquan Yang∗, Yong Deng, Xuanxuan Zhang, Hui Gong. A method of extracting structural priors from images of micro-CT for fluorescence molecular tomography reconstruction. Journal of X-ray Science and Technology, 2014, 22, 285-297.  
38. Longjun He, Xing Ming, Qian Liu*. A medical application integrating remote 3D visualization tools to access picture archiving and communication system on mobile devices. Journal of Medical Systems, 2014, 38(44):1-13.
39. Hua Shi, Nannan Sun, Avraham Mayevsky, Zhihong Zhang, Qingming Luo*. Early identification of acute hypoxia based on brain NADH fluorescence and cerebral blood flow. Journal of Innovative Optical Health Sciences, 2014, 7(2):1450033.
40. Yan Ma, Cheng Gong, Yilong Ma,Yu-Hui Zhang*. The backbone stereochemistry influences the intracellular distribution and uptake mechanism of oligoarginines. Journal of Innovative Optical Health Sciences, 2014, 7(5):1450019.
41. Xiang Wen, Xiewei Zhong, Tingting Yu, Dan Zhu*. A Monte Carlo based lookup table for spectrum analysis of turbid media in the reflectance probe regime. Quantum Electronics, 2014, 44(7): 641-645.

 In press

42. C. Li1, Zhe Hu1, M. P. Aldred, Ling-Xi Zhao, H. Yan, G. F. Zhang, Zhen-Li Huang*, A. D. Q. Li*, M. Q. Zhu*.Water-soluble polymeric photoswitching dyads impart super-resolution lysosome highlighter. Macromolecules, 2014, (online published on Dec. 3).
43. Jingpeng Wu1, Congdi Guo1, Shangbin Chen, Tao Jiang, Yong He, Wenxiang Ding, Zhongqin Yang, Qingming Luo, Hui Gong*. Direct 3D Analyses Reveal Barrel-Specific Vascular Distribution and Cross-Barrel Branching in the Mouse Barrel Cortex. Cerebral Cortex, 2014, (online published on Aug. 1).
44. Caihua Liu,  Yue Guan,  Jianru Wang,  Xiewei Zhong, Xiuli Liu, Dan Zhu*. Reflectance spectroscopy for noninvasive evaluation of hair follicle stage. Journal of Biomedical Optics, 2015, 20(5): 051011.
45. Ni Jiang, Wanneng Yang, Lingfeng Duan, Guoxing Chen, Wei Fang, Lizhong Xiong, Qian Liu*. A nondestructive method for estimating the total green leaf area of individual rice plants using multi-angle color images. Journal of Innovative Optical Health Sciences, 2015, 8(2):1550002.
46. Caihua Liu, Rui Shi, Min Chen*, Dan Zhu*. Quantitative evaluation of enhanced laser tattoo removal by skin optical clearing. Journal of Innovative Optical Health Sciences, 2015, 8(3):1541007.


1. C. Li, H. Yan, Ling-Xi Zhao, G. F. Zhang, Zhe Hu, Zhen-Li Huang, M. Q. Zhu*, A trident dithienylethene-perylenemonoimide dyad with super fluorescence switching speed and ratio for all-optical transistor and optical nanoimaging. Nature Communications, 2014, 5:5709.
2. Kaiyu Wang, Jiaxin Gong, Qingxiu Wang, Hao Li, Qi Cheng, Yafeng Liu, Shaoqun Zeng, Zuoren Wang*. Parallel pathways convey olfactory information with opposite polarities in Drosophila. Proc Natl Acad Sci U S A, 2014, 111(8): 3164-3169.
3. Wei Zhou1, Jin Chang1, Xin Wang, Masha G. Savelieff, Yinyin Zhao, Shanshan Ke, Bing Ye*. GM130 is required for compartmental organization of dendritic Golgi Outposts. Current Biology, 2014, 24(11): 1227–1233.
4. Qiaoya Lin, Cheng S. Jin, Huang Huang, Lili Ding, Zhihong Zhang, Juan Chen*, Gang Zheng*. Nanoparticle-enabled, image-guided treatment planning of target specific RNAi therapeutics in an orthotopic prostate cancer model. Small, 2014.
5. Qiaoya Lin, Juan Chen, Zhihong Zhang, Gang Zheng*. Lipid-based nanoparticles in the systemic delivery of siRNA. Nanomedicine ,2014, 9(1): 105–120.
6. Jie Tu, Fan Yang, Jun Wan, Yunhui Liu, Jie Zhang, Bifeng Wu, Yafeng Liu, Shaoqun Zeng, Liping Wang*. Light-controlled astrocytes promote human mesenchymal stem cells toward neuronal differentiation and improve the neurological deficit in stroke rats. Glia, 2014, 62(1):106-21.
7. Yang Xia, Yuan Zhao, Mingpo Yang, Shaoqun Zeng*, Yousheng Shu*. Regulation of action potential waveforms by axonal GABAA receptors in cortical pyramidal neurons. PLoS One, 2014, 9(6): e100968.
8. A N Pavlov*, O V Semyachkina-Glushkovskaya, Yang Zang, O A Bibikova, O N Pavlova, Qin Huang, Dan Zhu, Pengcheng Li, V V Tuchin, Qingming Luo. Multiresolution analysis of pathological changes in cerebral venous dynamics in newborn mice with intracranial hemorrhage: adrenorelated vasorelaxation. Physiological Measurement, 2014, 35(10):1983-1999.